Showing posts with label Rattus rattus. Show all posts
Showing posts with label Rattus rattus. Show all posts

Tuesday, 23 January 2018

Black Rats and black rats. Close encounters of different kinds

A Black Rat in Sichuan

The last wild mammal we saw before leaving in Sichuan in November was a Black Rat (Rattus rattus). It was moving on a grating over a drain at a service station on a motorway near Chengdu. For some reason the overhead artificial lighting late on a winter’s afternoon played havoc with my video. However. Tim Melling took still photographs and this is one of them:


Black Rat (Rattus rattus)


Black Rats, originally from India and south-east Asia, arrived in Britain in Roman times. Of lighter build than the Brown Rat (Rattus norvegicus) which arrived in the 18th Century, they have a less shaggy coat, larger ears and a relatively longer and narrower tapering tail which has been described as semi-prehensile. They were once common and widespread in sea ports although the Brown Rat, once introduced, would fight and kill them. In and around ports, where arriving ships topped up the supply, they lived in buildings, usually in the roof where they could invade other buildings by climbing across cables or through attics. Black Rats were also known as Roof Rats. A building could be infested with Black Rats living in the roof and Brown rats living at or below ground level.

There was a massive decline in Black Rat numbers in Britain during the latter half of the 20th Century. Intensive reporting of infestations by local authority medical officers and the laying of poison baits coupled with statutory requirements for owners of buildings to free them of rats and for ships to be treated as buildings in that respect. The construction of rat-proof ships also helped but there were still reports twenty-five years ago of Black-Rat-infested ships turning up in British docks; in Hull in 1992 the Russian factory ships known as Klondikers were of particular concern.

By the 21st Century Black Rat in Britain were only being reported from the islands of Lundy in the Bristol Channel, the Shiant Islands in the Outer Hebrides and a small island in the Firth of Forth. Shipwrecks or visits by sailors in ships’ boats are thought to have been responsible for introducing the species and/or the Brown Rat to these islands. Because of the devastating effects on breeding seabirds, extermination programmes have wiped out the rats on Lundy, Ailsa Craig (although I do not know whether the rats there were Black or Brown, or both) to the enormous benefit of nesting seabirds. Now I read a similar programme on the Shiants in 2015-16 has been successful.

A black rat in Troon—a Black Rat or a black Brown Rat?

Rats have loomed large in my life recently. The well-spaced fairways and very rough and tough ‘rough’ of Royal Troon Golf Course make it a haven for local wildlife but also a killing field. The foxes, stoats and birds of prey ensure the course is littered with body parts of birds (mainly gulls) and rabbits. A couple of weeks ago I was surprised to find the partial remains of a rat on one of the fairways.  I, nor my playing partners, could remember having seen the remains of a dead rat before. But what was surprising was that the fur on the remaining skin was black and the tail in the light of what passes for dawn in January in Scotland seemed long. First I checked that the hair was not just wet and simply looked black; it was black. My thought was that this could either be a black (i.e. melanistic) Black Rat or that there was an outside chance this could be a Black Rat, especially since the port of Troon is at the other end of the town from the course. Fortunately, a fellow player in our two-ball foursome had his new phone with him and we managed a photograph in the very poor light.

The photograph suggested that the shape of the tail seemed more Brown-Rat like than Black. While experts on these non-native British rats had a look at the photograph and concluded that it was a black Brown Rat—probably—I found that Black Rats once did occur in Ayrshire with five or fewer than five infestations being reported for the old County of Ayr in 1951. Specifically excluded were the burghs of Ayr and Kilmarnock, which suggests the Black Rat, if not that common, was present in the seaports along the Ayrshire coast. In 1956 when numbers of Black Rats throughout Britain had declined markedly, there were still reports of individual Black Rats for the County of Ayr.




In the London docks, the incidence of black Brown Rats was 1.66 per cent in the 1940s. Is that still the case in present-day populations in Britain? The evidence I have read suggests that the population is dimorphic (rather than black ones appearing by frequent mutation) and that black form is not uncommon. However, a low proportion surely suggests a strong selection pressure against black. Are they more easily seen by predators if they are short of food and have to forage by day? Whatever the explanation, the remains of melanistic Brown Rat appeared at my feet as I approached my ball. What happened next—to my ball, that is? Politer not to ask.

Bentley EW. 1959. The distribution and status of Rattus rattus L in the United Kingdom in 1951 and 1956. Journal of Animal Ecology 28, 299-308.

Lock J. 2006. Eradication of brown rats Rattus norvegicus and black rats Rattus rattus to restore breeding seabird populations on Lundy Island, Devon, England. Conservation Evidence 3, 111-113.




Thursday, 18 January 2018

Black Death and Black Rats. Not Fake news just NOT news

Black Death 'spread by humans not rats’. BBC News 15 January 2018

Maybe Rats Aren't to Blame for the Black Death. National Geographic 15 January 2018

Black Death plague spread by dirty humans not rats, study suggests. Daily Telegraph 16 December 2018

The classic explanation for the Black Death plague is wrong, scientists say. Washington Post 16 January 2018


These are typical of the headlines appearing around the world as a result of a paper in PNAS*, and this is how the authors describe it under the subtitle, Significance.

Plague is infamous as the cause of the Black Death (1347–1353) and later Second Pandemic (14th to 19th centuries CE), when devastating epidemics occurred throughout Europe, the Middle East, and North Africa. Despite the historical significance of the disease, the mechanisms underlying the spread of plague in Europe are poorly understood. While it is commonly assumed that rats and their fleas spread plague during the Second Pandemic, there is little historical and archaeological support for such a claim. Here, we show that human ectoparasites, like body lice and human fleas, might be more likely than rats to have caused the rapidly developing epidemics in pre-Industrial Europe. Such an alternative transmission route explains many of the notable epidemiological differences between historical and modern plague epidemics.

Sadly, while the mathematical modelling by these authors supports the view that Black Rats (Rattus rattus) were not important in transmitting plague via fleas during its rapid spread through Europe the media reports do not point out that this is just more work on this theme. Equally sadly, neither the authors of the paper nor the journalists parroting the press release from the journal, mention the fact that the Black Rat theory for transmission in Europe was pretty well shot down by Graham Twigg, formerly of Royal Holloway College, University of London (and student of Eric Thomas Brazil Francis in Sheffield) in his book, The Black Death, A Biological Reappraisal (Batsford), published in Britain in 1984.

Graham Twigg based his claim that Black Rats could not have been involved in the transmission of plague in England (or northern Europe) on knowledge of the biology of the species, then the only species of rat in Britain. Black Rats, nor the Brown Rats (Rattus norvegicus) that came later, are native. The Black Rat, also known as the Ship Rat, arrived from the east, coming ashore from ships carrying them and infesting the buildings of ports. They need a warm environment and rarely leave the shelter of buildings or reach the countryside. They were not, therefore, sufficiently widely distributed across the country for their fleas to carry the infection.

Black Rats and other rodents, though, through the fleas they carry, have been implicated in the spread of plague in other parts of the world, including Hong Kong, where the bacterium Yersinia pestis was first isolated from plague victims in 1894.

Twigg also threw doubt on the infective agent that caused the Black Death but that is a different question I will not address here.

After the 1980s when Twigg’s book made the first headlines, the story emerges at irregular intervals in the popular press. For example, here is the headline from The Independent of 8 October 1994: Maybe the black rat didn't do it: the Black Death.

If present-day journalists had even looked at the Wikipedia article on the Black Death they may have been better informed on the research reported in PNAS. Indeed there are whole websites covering The Black Death and the theories on its cause and rapid spread. The same journalists may then have realised that PNAS paper is just a minor addition to the literature adding apparently quantitative verisimilitude to what has been qualitatively obvious. Worse still, the new ‘discovery’ has already been added to a Wikipedia article on Yersinia pestis as a novel idea!

So, we have even more evidence that the Public Understanding of Science has turned into the Public Misunderstanding of Science, with scientific journals and their publicists putting out hyped stories for gullible journalists to fill media space.

*Dean KR, Krauer F, Walløe L, Lingjærde OC, Bramanti B, Stenseth NC, Schmid BV. 2018. Human ectoparasites and the spread of plague in Europe during the Second Pandemic. Proceedings of the National Academy of Sciences of the USA. Published ahead of print January 16, 2018, doi:10.1073/pnas.1715640115

Thursday, 9 May 2013

More on Hong Kong Rats


In the previous posts, I referred to the two hillside rats of Hong Kong, Niviventer fulvescens (Chestnut Spiny Rat) and Rattus andamanensis (Indochinese Forest Rat), to use their current nomenclature.

I also made reference to the Roof or Black Rat, Rattus rattus flavipectus, known as the Buff-breasted Rat. Well, things are not that simple with that rat now. The native house rat R.r.flavipectus is now considered to be included in Rattus tanezumi, the wide-ranging Oriental or Asiatic House Rat. The Black or Roof Rat proper, Rattus rattus, also seems to be present, introduced, like the Brown or Norway Rat (Rattus norvegicus) by ship.

Now, in a delicious twist, not only has R.r. flavipectus been included in R. tanezumi but so has Sladen’s rat — the true Sladen’s rat (R.r. sladeni) — not, please note, the form to which the name was misapplied in Hong Kong. So, in Hong Kong, the misnaming of what is now Rattus andamanensis was doubly wrong; Sladen’s rat could, more correctly, been assigned to R.r.flavipectus.

I now wonder whether somebody in Hong Kong realised the affinity between Sladen’s rat, R.r.sladeni) and R.r.flavipectus (all the Rattus rattus subspecies in fact) and lumped them as Sladen’s rat as a common name. Then, when it was realised that there were two forms of what was then Rattus rattus, was the Sladen’s name applied to the wrong one? In this respect, it is interesting that there is no mention of Sladen's Rat in Herklots’s book, The Hong Kong Countryside published in 1951. He thanks John Romer (who I think arrived as Pest Control Officer in 1946) for information on the rats. Ignoring the bandicoot rat, he provides notes only on Rattus norvegicus and Rattus rattus. However, he draws a distinction between Rattus rattus and R.r.flavipectus and goes on to note:

It (R.r.flavipectus) is a house-rat and is a serious pest but it is also abundant as a free-living species on the hillsides and in the fields [my italics] for it is native to South China.

My interpretation of that is what are now Rattus tanezumi and Rattus andamanensis (the free-living species on the hillsides) were not recognised as separate species. It is therefore possible that when they were, the wrong name was applied to our old friend in the lab roof.

The misnaming of species as well as changes in taxonomy has other consequences. It would appear that papers that reported research on Rattus sladeni or Rattus rattus sladeni could be interpreted as work on either Rattus tanezumi or Rattus andamanensis. If the animals were from Yunnan or surrounding areas, it would be the former; if Hong Kong, the latter.

I found an example of trying to update old information on Sladen’s Rat. My acquaintance with this species, like Huang’s Rat in an earlier post, began when I was given the offspring of some that had bred at London Zoo, in about 1963. Then in the website of the Bartlett Society (concerned with the history of zoos), I found a list, First and early breeding records for mammals in the UK and Eire. In the list is Sladen's Rat, Rattus tanezumi Temminck, 1844, bred, London Zoo 1967 (they bred there earlier as I noted). A note for the entry reads:

Zoological Society of London Annual Report 1967, p39 as R. rattus sladeni. The subspecies sladeni is no longer considered valid.

However, these rats, like (from the same source): 

Yellow-breasted Rat Rattus tanezumi Temminck, 1844 (bred London 1962) International Zoo Yearbook, Vol. 4 (1963) p227, as Rattus rattus flavipectus

and:

Chestnut Spiny Rat Niviventer fulvescens (Gray, 1847) (bred London 1964) International Zoo Yearbook, Vol. 6 (1966) p392, as Rattus huang. This species is also known as Huang's Rat.

were all sent from Hong Kong. Therefore, the record for Sladen’s Rat, has been incorrectly updated in this instance to Rattus tanezumi

Incidentally, I do not know who sent the three rats to London. It could have been PM Marshall, or John Romer or Ken Searle or one of the first two via the last. I, or somebody, needs to look that up because it might provide a clue to what names were in use in Hong Kong then compared with what they were called in London.

The List of Mammals of Hong Kong on Wikipedia has the list of ‘ratty’ rats as I have described their current status in the last three posts. But taxonomy changes, and changes again with new evidence, new interpretations and with new fashions. So watch out to see what happens next.


Links

Bartlett Society link to breeding records: http://www.zoohistory.co.uk/projects/first_breedings/rodentia

Rattus tanezumi:
http://www.ceropath.org/rdbsea/species/rattus%20tanezumi
http://www.iucnredlist.org/details/biblio/19366/0
http://www.bucknell.edu/msw3/browse.asp?id=13001785

List of Hong Kong mammals: http://en.wikipedia.org/wiki/List_of_mammals_of_Hong_Kong